Volume 252, Issue 2 p. 178-188
Original Paper

Synthesis of diagnostic quality cancer pathology images by generative adversarial networks

Adrian B Levine

Adrian B Levine

Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada

These authors contributed equally to this work.

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Jason Peng

Jason Peng

Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada

School of Biomedical Engineering, University of British Columbia, Vancouver, Canada

These authors contributed equally to this work.

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David Farnell

David Farnell

Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada

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Mitchell Nursey

Mitchell Nursey

Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada

School of Biomedical Engineering, University of British Columbia, Vancouver, Canada

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Yiping Wang

Yiping Wang

Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada

School of Biomedical Engineering, University of British Columbia, Vancouver, Canada

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Julia R Naso

Julia R Naso

Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada

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Hezhen Ren

Hezhen Ren

Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada

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Hossein Farahani

Hossein Farahani

Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada

School of Biomedical Engineering, University of British Columbia, Vancouver, Canada

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Colin Chen

Colin Chen

Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada

School of Biomedical Engineering, University of British Columbia, Vancouver, Canada

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Derek Chiu

Derek Chiu

Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada

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Aline Talhouk

Aline Talhouk

Department of Obstetrics and Gynecology, University of British Columbia, Vancouver, Canada

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Brandon Sheffield

Brandon Sheffield

Department of Pathology, William Osler Health Centre-Brampton Civic Hospital, Brampton, Canada

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Maziar Riazy

Maziar Riazy

Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada

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Philip P Ip

Philip P Ip

Department of Pathology, University of Hong Kong, Hong Kong SAR, PR China

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Carlos Parra-Herran

Carlos Parra-Herran

Laboratory Medicine and Pathobiology, University of Toronto, Toronto, Canada

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Anne Mills

Anne Mills

Department of Pathology, University of Virginia, Charlottesville, VA, USA

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Naveena Singh

Naveena Singh

Barts and the London School of Medicine and Dentistry, Queen Mary University of London, London, UK

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Basile Tessier-Cloutier

Basile Tessier-Cloutier

Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada

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Taylor Salisbury

Taylor Salisbury

Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada

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Jonathan Lee

Jonathan Lee

Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada

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Tim Salcudean

Tim Salcudean

Electrical & Computer Engineering, University of British Columbia, Vancouver, Canada

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Steven JM Jones

Steven JM Jones

Canada's Michael Smith Genome Sciences Centre, Vancouver, Canada

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David G Huntsman

David G Huntsman

Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada

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C Blake Gilks

Corresponding Author

C Blake Gilks

Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada

Correspondence to:

A Bashashati, 2222 Health Sciences Mall, Vancouver, V6T 1Z3 BC, Canada. E-mail: [email protected]; or S Yip, E-mail: [email protected]; or CB Gilks,

E-mail: [email protected]

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Stephen Yip

Corresponding Author

Stephen Yip

Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada

Correspondence to:

A Bashashati, 2222 Health Sciences Mall, Vancouver, V6T 1Z3 BC, Canada. E-mail: [email protected]; or S Yip, E-mail: [email protected]; or CB Gilks,

E-mail: [email protected]

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Ali Bashashati

Corresponding Author

Ali Bashashati

Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, Canada

School of Biomedical Engineering, University of British Columbia, Vancouver, Canada

Electrical & Computer Engineering, University of British Columbia, Vancouver, Canada

Correspondence to:

A Bashashati, 2222 Health Sciences Mall, Vancouver, V6T 1Z3 BC, Canada. E-mail: [email protected]; or S Yip, E-mail: [email protected]; or CB Gilks,

E-mail: [email protected]

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First published: 19 July 2020
Citations: 68

This paper has been previously posted as a preprint on bioRxiv (https://doi.org/10.1101/2020.02.24.963553).

DGH is an Associate Editor of The Journal of Pathology. No other conflicts of interest were declared.

Funding information: Canadian Institutes of Health Research, Grant/Award Number: 201903PJT-418734-MPI-CAAA-37916; Natural Sciences and Engineering Research Council of Canada, Grant/Award Number: RGPIN-2019-04896z; VGH & UBC Hospital Foundation: Carraresi OVCARE Fund

Abstract

Deep learning-based computer vision methods have recently made remarkable breakthroughs in the analysis and classification of cancer pathology images. However, there has been relatively little investigation of the utility of deep neural networks to synthesize medical images. In this study, we evaluated the efficacy of generative adversarial networks to synthesize high-resolution pathology images of 10 histological types of cancer, including five cancer types from The Cancer Genome Atlas and the five major histological subtypes of ovarian carcinoma. The quality of these images was assessed using a comprehensive survey of board-certified pathologists (n = 9) and pathology trainees (n = 6). Our results show that the real and synthetic images are classified by histotype with comparable accuracies and the synthetic images are visually indistinguishable from real images. Furthermore, we trained deep convolutional neural networks to diagnose the different cancer types and determined that the synthetic images perform as well as additional real images when used to supplement a small training set. These findings have important applications in proficiency testing of medical practitioners and quality assurance in clinical laboratories. Furthermore, training of computer-aided diagnostic systems can benefit from synthetic images where labeled datasets are limited (e.g. rare cancers). We have created a publicly available website where clinicians and researchers can attempt questions from the image survey (http://gan.aimlab.ca/). © 2020 Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd.